The Boca Raton Airport (BCT) is a general aviation airport located immediately adjacent to Florida Atlantic University and Interstate 95. It has a control tower which is manned from 0700 to 2300. The Boca Raton Airport is publicly owned and governed by a seven member Authority appointed by the City of Boca Raton and the Palm Beach County Commission.
Palm Beach International Airport (PBI) is located to the north in West Palm Beach.
Fort Lauderdale-Hollywood International Airport (FLL) is located to the south in Fort Lauderdale.

U.S. Highway 1 passes through the city’s downtown, commercial, and industrial districts.
U.S. Highway 441 passes through other commercial districts and diminishing agricultural areas.
Interstate 95 bisects the city from north to south with four interchanges serving Boca Raton.
Florida's Turnpike passes through unincorporated Boca Raton with one interchange at Glades Road (State Highway 808).

The Tri-Rail commuter rail system serves the city with its Boca Raton station located on the south side of Yamato Road just west of I-95.
CSX Transportation and the Florida East Coast Railway also serve the city.